Making protein Reeses cups with cottage cheese filling at home has become one of my favorite ways to satisfy sweet cravings while keeping my nutrition goals on track. If you love the classic combination of chocolate and peanut butter—and who doesn’t?—then you’ll absolutely adore this homemade version. Unlike store-bought candy that leaves you feeling sluggish, protein Reeses cups deliver sustained energy and keep you feeling fuller longer. This recipe transforms a beloved treat into a nutritious powerhouse that tastes incredibly indulgent without the guilt.
Whether you’re meal prepping for the week, looking for post-workout snacks, or simply want a healthier alternative to traditional Reese’s cups, this homemade Reese cups recipe is about to become your new go-to dessert. The cottage cheese filling might sound unexpected, but it creates a creamy, rich texture that rivals the original candy—and with significantly more protein per serving. Let’s dive into how to make these amazing treats!
Nutritional Benefits
The magic of protein Reeses cups with cottage cheese filling lies in their exceptional nutritional profile. Each piece delivers approximately 6-7 grams of protein, making them perfect for post-workout recovery or afternoon snack satisfaction. Cottage cheese adds a surprising nutritional boost with casein protein, which digests slowly and keeps you satisfied for hours.
These homemade treats also contain healthy fats from peanut butter and coconut oil, which support brain function and hormone production. The fiber content helps with digestion and blood sugar stability, while the minimal added sugar means no energy crashes. Unlike traditional candy that sends your blood sugar on a roller coaster, DIY Reeses cups maintain steady energy levels and prevent afternoon slumps.
Nutritional Breakdown Per Cup
| Nutrient | Amount | % Daily Value |
|---|---|---|
| Calories | 120-140 | 6-7% |
| Protein | 6-7g | 12-14% |
| Total Fat | 7-8g | 11-12% |
| Saturated Fat | 2-3g | 10-15% |
| Carbohydrates | 8-10g | 3-4% |
| Fiber | 1-2g | 4-8% |
| Sugar | 4-5g | 8-10% |
| Sodium | 80-110mg | 3-5% |
Ingredients & Substitutions

| Ingredient | Role in Recipe | Possible Substitutions |
|---|---|---|
| Cottage Cheese (1 cup) | Creates creamy filling base with added protein | Greek yogurt, ricotta cheese, or plain protein pudding mix |
| Peanut Butter (½ cup natural) | Provides classic flavor and healthy fats | Almond butter, cashew butter, or powdered peanut butter mixed with water |
| Vanilla Protein Powder (¼ cup) | Boosts protein content significantly | Chocolate protein powder, collagen powder, or plant-based vegan protein |
| Maple Syrup (2 tablespoons) | Natural sweetener for filling | Honey, coconut nectar, or monk fruit sweetener for lower sugar |
| Chocolate Chips (1 cup sugar-free) | Chocolate coating that holds everything together | Dark chocolate melts, vegan chocolate chips, or regular chocolate chips |
| Coconut Oil (2 teaspoons) | Thins chocolate for smooth coating | Almond oil, avocado oil, or pure butter |
| Sea Salt (pinch) | Enhances chocolate and peanut flavor | Himalayan pink salt or regular table salt |
| Vanilla Extract (1 teaspoon) | Adds depth and aroma | Almond extract, coconut extract, or omit entirely |
Equipment Needed
To create perfect healthy Reeses cups, you’ll need some basic kitchen equipment. A mini muffin tin is essential—this allows you to make perfectly-sized portions that mimic traditional Reese’s cups. Silicone muffin liners make removal effortless and look beautiful. You’ll also want a microwave-safe bowl for melting chocolate and a small mixing bowl for combining your filling ingredients.
A cookie dough scoop or small measuring spoon ensures consistent sizing, while a fork or small spatula helps spread ingredients smoothly. A refrigerator or freezer is necessary for setting your cups, and having parchment paper on hand provides extra insurance for easy removal.
Step-by-Step Instructions

Step 1: Prepare Your Mold
Begin by lining your mini muffin tin with silicone liners or paper baking cups. This simple step prevents sticking and makes removal effortless. Pro tip: place your lined muffin tin in the freezer for 10 minutes while you prepare the filling. A chilled mold helps the chocolate bottom layer set faster.
Step 2: Create the Cottage Cheese Base
In a small bowl, combine one cup of cottage cheese with half a cup of natural peanut butter. If your cottage cheese is lumpy, blend it briefly to achieve a smoother consistency. The goal is a creamy base that will hold your peanut butter flavor. Add your quarter cup of vanilla protein Reeses cups protein powder and mix thoroughly. Some prefer to blend this entire mixture in a food processor for ultimate smoothness.
Step 3: Make the Filling
Add two tablespoons of maple syrup and one teaspoon of vanilla extract to your cottage cheese mixture. Stir well until everything combines beautifully. The mixture should resemble thick peanut butter. If it seems too soft, add a tablespoon of powdered peanut butter to firm it up. For those making Reeces peanut butter cup ideas, this is where you can experiment with flavor additions like cocoa powder or cinnamon.
Step 4: Melt the Chocolate
Place your cup of sugar-free chocolate chips in a microwave-safe bowl with two teaspoons of coconut oil. Microwave in 20-second intervals, stirring between each interval, until completely melted and smooth. The coconut oil prevents the chocolate from becoming too thick and ensures a silky coating. For homemade Reese cups, avoid overheating the chocolate, as this can cause it to become grainy.
Step 5: Layer the Bottom Chocolate
Pour approximately one-third of your melted chocolate into each muffin liner, creating a thin, even layer covering the bottom. Use the back of a spoon to spread it smoothly. Place the tin in the refrigerator for 5-10 minutes until the chocolate firms up. This cold chocolate layer prevents the filling from mixing with the bottom coating.
Step 6: Add the Filling
Once the bottom chocolate layer has set, place approximately one tablespoon of your cottage cheese filling mixture onto each chocolate base. Gently flatten it slightly, leaving a small border around the edges. This gap ensures the chocolate layers will seal properly.
Step 7: Seal with Top Chocolate Layer
Pour the remaining melted chocolate over each filled cup, completely covering the peanut butter filling. Smooth the tops with a small spoon or butter knife. If desired, sprinkle a tiny pinch of flaky sea salt on top for that beloved sweet-and-salty contrast. DIY Reeses cups taste incredible with this finishing touch!
Step 8: Final Chill
Transfer your completed muffin tin to the refrigerator for at least 30 minutes, or place it in the freezer for 15 minutes for faster setting. Once completely firm, carefully remove the silicone liners and store your protein Reeses cups with cottage cheese filling in an airtight container.
Troubleshooting & Pro Tips
My chocolate is too thick: This happens when chocolate gets too hot or when the coconut oil isn’t properly distributed. Simply reheat gently in 10-second microwave bursts. Add more coconut oil if needed—it’s your secret to silky chocolate.
The filling is too soft: If your filling seems spreadable rather than scoop-able, refrigerate it for 15 minutes before filling your cups. You can also increase the protein powder by a tablespoon to firm things up naturally.
Chocolate layers are separating: Ensure each chocolate layer is completely set before adding the next one. Patience is key! Don’t skip the chilling times, even though you’re eager to enjoy your treats.
Cups are sticking to liners: Use quality silicone liners rather than paper, or spray paper liners lightly with cooking spray. Freeze for an extra 10 minutes before removal for easier release.
Pro tip: Make a double batch and freeze extras. These treats actually taste better straight from the freezer, developing a more satisfying texture that’s closer to traditional candy.
Storage & Make-Ahead Tips
One of the best aspects of making healthy Reeses cups is their excellent shelf life. Store your finished cups in an airtight container in the refrigerator for up to one week, or freeze them for up to three months. Frozen cups develop a more pleasant texture and take longer to eat, which helps you enjoy them more mindfully.
For meal prep purposes, consider making a triple batch on Sunday. Portion them into glass containers, freeze, and grab one or two whenever you need a protein-rich snack. They thaw at room temperature in about 15 minutes if you prefer them softer. For on-the-go convenience, place individual cups in small parchment paper squares and store in a freezer bag—perfect for lunchboxes and gym bags!
If you want to get creative, try making variations. Imagine Reeses brownies with a layer of this filling sandwiched between brownie layers, or Reese’s pieces cookies rolled in crushed freeze-dried fruit. The cottage cheese filling works beautifully with chocolate in countless applications.
Conclusion
Creating protein Reeses cups with cottage cheese filling transforms your dessert game entirely. These incredible treats prove that healthy eating doesn’t mean sacrificing flavor or satisfaction. With simple, recognizable ingredients and minimal preparation time, you can make homemade Reese cups that rival store-bought versions while delivering triple the protein and half the sugar.
Whether you’re following a specific fitness goal, managing your weight, or simply wanting smarter snack choices, protein Reeses cups deserve a permanent place in your recipe rotation. The cottage cheese filling adds nutritional depth while the classic chocolate-peanut butter combination delivers the nostalgia we all crave. These treats work perfectly as post-workout fuel, afternoon snacks, or guilt-free desserts after dinner.
The beauty of this recipe lies in its simplicity and customization potential. Once you master the basic version, you can explore endless variations. Create Reeses dessert options by layering the filling between cake layers, or make Homemade Reese’s Eggs for holiday treats by molding the filling into egg shapes. For additional inspiration and flavor variations like healthy Reeses cups, check out our collection of protein-packed treat recipes.
Start making these delicious protein Reeses cups with cottage cheese filling today, and experience the joy of dessert that actually supports your health goals. Your taste buds and your fitness journey will thank you!

Frequently Asked Questions
Can I use regular cottage cheese or does it need to be small curd?
Both work beautifully, though small curd creates a smoother filling. If using regular cottage cheese, simply blend it briefly to break down larger curds before mixing with other ingredients.
What’s the best protein powder brand for this recipe?
Any vanilla protein powder works well—whey, plant-based, or vegan varieties all deliver excellent results. Choose one without strong artificial flavors to let the peanut butter shine through.
Are these cups truly dairy-free if I use vegan protein powder?
They would be if you substitute the cottage cheese with coconut cream or vegan yogurt and use vegan chocolate chips. The cottage cheese does contain dairy, so that’s the limiting factor for dairy-free versions.
How many calories are in each cup?
Each cup contains approximately 120-140 calories, depending on your specific ingredient choices and portion size. The nutritional information can vary based on brands used.
Can I make these without a muffin tin?
Yes! Pour the mixture into a square baking pan in layers instead. Once set, cut into squares and store in parchment paper. You’ll get larger pieces this way, perfect for sharing.
Why add salt to the tops?
The contrast between sweet chocolate, salty coating, and rich peanut butter creates a more complex, satisfying flavor profile that closely mimics commercial Reese’s cups. It’s absolutely optional but highly recommended.
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